ISU PRRSView

Description of Lineages

ISU PRRSView is an interactive web-based tool developed to provide analytical information from Porcine Reproductive and Respiratory Syndrome Virus sequence data based on cases processed at the Iowa State University Veterinary Diagnostic Laboratory. The goal of ISU PRRSView is to allow veterinarians, swine producers, and researchers to analyze their sequence data and aid in making informed decisions regarding PRRSV and swine health. ISU PRRSView data is derived from diagnostic samples submitted from a diverse array of swine farms and production systems around the United States and North America.

Recommended Browsers

Suite of Tools

ORF5 BLAST Tool
Identify genetically similar sequences that match via BLAST.
ORF5 Vaccine Identity Tool
Calculate genetic sequence identity to vaccines, corresponding RFLP value, sequence ambiguities, and predicted lineage through phylogenetic inference for PRRSV sequences.
ORF5 RFLP Tool
Calculate RFLP and cut site patterns for PRRSV sequences.

Tutorials

Tutorial
Video based walkthrough guide to the various tools listed above along with sample fasta.