ISU PRRSView

BLAST Tool

This tool Identifies the top 10 genetically similar sequences in the ISU VDL data using BLAST. Information about the lineages, RFLP values, and state is provided for each matched case result.


Sequence type
nucleotide
amino acid
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References

  1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990). Basic local alignment search tool. Journal of molecular biology, 215(3), 403-410.
  2. Zhang, Z., Schwartz, S., Wagner, L., & Miller, W. (2000). A greedy algorithm for aligning DNA sequences. Journal of Computational biology, 7(1-2), 203-214.
  3. Paploski, Igor Adolfo Dexheimer, et al. Temporal dynamics of co-circulating lineages of porcine reproductive and respiratory syndrome virus. Frontiers in microbiology 10 (2019): 2486.