ISU PRRSView

PRRSV selection report


February 2025

Recommended Reference Strains

Strain Lineage Distance to Consensus
86|PRRSV/swine/Iowa/9133/2025|IA|2025-01-23 L1C.5 3
5|PRRSV/swine/Indiana/12047/2025|IN|2025-01-29 L1H 27
92|PRRSV/swine/North_Carolina/5965/2025|NC|2025-01-15 L1A 8
4|PRRSV/swine/USA/9079/2025|USA|2025-01-23 L1B 7
46|PRRSV/swine/Minnesota/8121/2025|MN|2025-01-17 L5A 0
14|PRRSV/swine/Iowa/8328/2025|IA|2025-01-22 L1C.2 1
4|PRRSV/swine/Iowa/12090/2025|IA|2025-01-30 L1D 0
Download Sequence FASTA Download Consensus Sequences (FASTA)

Details

Lineage: L1C.5 86|PRRSV/swine/Iowa/9133/2025|IA|2025-01-23


Distance to consensus: 3 nt
>86|PRRSV/swine/Iowa/9133/2025|IA|2025-01-23
atgttggggaaatgcttgaccgcgggctgttgctcgcaattgctttttttgtggtgtatcgtgccgttctgttttgttgcgctcgtcaacgccaacaacagcagcagctcccatttacagttgatttataacctgacgatatgtgagctgaatggcacagattggct---aaatgaaagatttgactgggcagtggagactttcgttatctttcctgtgttgactcatatcgtctcttacggtgcccttaccactagccattttcttgacacggtcggtttggccactgtgtccaccgccggatattatcacgggcggtatgtattgagtagcatttacgctgtctgtgccctggctgcgttgatttgcttcgccattaggttggcgaaaaattgcatgtcctggcgctactcatgcaccagatataccaattttctcctggacactaagggcaaactctaccgctggcggtcatccgtcattatagagaaagggggtaaagtggatgttgggggtcacttaatcgacctcaaaagagttgtgcttgatggttccgcggcaacccctgtaaccaagatttcagcggaacaatggggtcgtccatag

Lineage: L1H 5|PRRSV/swine/Indiana/12047/2025|IN|2025-01-29


Distance to consensus: 27 nt
>5|PRRSV/swine/Indiana/12047/2025|IN|2025-01-29
atgttggtgaaatgcttgaccgcgggctattgctcgcaattgctttttttgtggtgtatcgtgccgttctgttttgttgcgctcgtcaacgccaacaacggcagcagctcccacttacaattgatttataacttgacgatatgcgagctgaatggcacggattggctgaatagcaaatttgactgggcagtggagacttttgtcatttttcctgtgttaactcatattgtttcctatggcgccctcactactagccacttacttgacacggtcggtctgatcactgtgtctaccgctggctatttgcatgggcggtatgtgttgagtagcatctatgctgtgtgtgctctggccgcgcttgtctgtttcgtcatcaggttaacgaaaaattgcatgtcctggcgttattcttgtaccagatacaccaactttctcctcgacaccaaaggcaagctctatcgctggcggtcgcccgtcatcatagagaaaggagggaaagttgaggttgggagccacctgatcgacctcaaaagagttgtgcttgatggttccgcggcaaccccagtaaccagaatttcagcggaacaatggggtcgtccttag

Lineage: L1A 92|PRRSV/swine/North_Carolina/5965/2025|NC|2025-01-15


Distance to consensus: 8 nt
>92|PRRSV/swine/North_Carolina/5965/2025|NC|2025-01-15
atgttggggaaatgcttgaccgcgggctgctgctcgcaattgccttttttgtggtgtatcgtgccgttctgttttgttgcgctcgtcaacgccaacaacagcagcagctcccatttacagttgatttataacctgacgatatgtgagctgaatggcacagattggctaaataaaagttttgattgggcggtggagacctttgttatttttcctgtgttgactcatatcgtctcctatggcgccctcaccaccagccatttccttgacacagtcggcctgatcaccgtgtctgccgccggatattaccacgggcggtatgtcttgagtagcatttatgccgtctgcgccctggctgcgttaacttgcttcgtcatcaggctaacaaaaaattgtatgtcctggcgttactcatgcaccagatacactaacttccttctggacaccaagggcaaactctatcgttggcggtctcctgtcatcatagagaaagggggtaaaattgaggtcgaaggtcacctgatcgacctcaagagagttgtgcttgacggttccgcggcaacccctgtaaccaaagtttcagcggaacaatggggtcgtccttag

Lineage: L1B 4|PRRSV/swine/USA/9079/2025|USA|2025-01-23


Distance to consensus: 7 nt
>4|PRRSV/swine/USA/9079/2025|USA|2025-01-23
atgttggggaaatgcttgatcgcgggctgttgctcgcagttgctttttttgtggtgtatcgtgccgttctgttttgttgtgcccaccagcgccaacagcaacagcagctcccacttacagttgatttataacctaacaatatgcgagctgaatggcacagattggctaaatcggaaatttggttgggcagtggagacctttgtcatctttcctttattgactcacattgtctcctatggtgccctcaccaccagtcatttccttgacacaatcggtttgatcactgtgtccaccgctgggtactaccacggacggtatgtcctgagcagcatttacgctgtctgcgctctggccgcgctgatttgttttgtcattaggctgacaaaaaactgcatgtcttggcgctactcatgtactagatatactaattttcttctagacaccaagggcaaactctatcgttggcggtcccccgtcatcatagaaaaaaaagggaaagtcgaggtcaacggtcatttgatcgacctcaagagagtagtgcttgatggttccgcagcaacccctgtaaccaaagtttcagcggaacaatgggaacgtccttag

Lineage: L5A 46|PRRSV/swine/Minnesota/8121/2025|MN|2025-01-17


Distance to consensus: 0 nt
>46|PRRSV/swine/Minnesota/8121/2025|MN|2025-01-17
atgttggagaaatgcttgaccgcgggctgttgctcgcaattgctttctttgtggtgtatcgtgccgttctgttttgctgtgctcgccaacgccagcaacgacagcagctcccatctacagctgatttacaacttgacgctatgtgagctgaatggcacagattggctagctaacaaatttgattgggcagtggagagttttgtcatctttcccgttttgactcacattgtctcctatggtgccctcactaccagccatttccttgacacagtcgctttagtcactgtgtctaccgccgggtttgttcacgggcggtatgtcctaagtagcatctacgcggtctgtgccctggctgcgttgacttgcttcgtcattaggtttgcaaagaattgcatgtcctggcgctacgcgtgtaccagatataccaactttcttctggacactaagggcagactctatcgttggcggtcgcctgtcatcatagagaaaaggggcaaagttgaggtcgaaggtcatctgatcgacctcaaaagagttgtgcttgatggttccgtggcaacccctataaccagagtttcagcggaacaatggggtcgtccttag

Lineage: L1C.2 14|PRRSV/swine/Iowa/8328/2025|IA|2025-01-22


Distance to consensus: 1 nt
>14|PRRSV/swine/Iowa/8328/2025|IA|2025-01-22
atgttggggaaatgcttgaccgcgggctgctgctcgcaattgctttttttgtggtgtatcgtgccgtcctgttttgttgcgctcgtcaacgccaacaacagcagcagctcccatttacaattgatctataacctgacgatatgtgagctgaatggcacagattggctaaataataaatttgattgggcagtggagaccttcgttatttttcctgctctaactcacattgtttcttatggcgcccttactactagccattttcttgacactgttggcctaatcactgtatccaccgccggttattatcacgggcggtatgttttaagtagcatttacgctgtttgtgccctggccgcgttcatttgtttcgtcatcaggttggtaaaaaattgcatgtcctggcgctactcatgcaccagatataccaattttcttctggacacaaagggcaaactttaccgctggcgatcgtccgtcatcatagagaaaggaggtaaagttgatgttggaggtcatttgatcgacctcaagagagttgtgctcgatggttccgcggcgactcctgtaaccaggatttcagcggaacaatggggtcgtccatag

Lineage: L1D 4|PRRSV/swine/Iowa/12090/2025|IA|2025-01-30


Distance to consensus: 0 nt
>4|PRRSV/swine/Iowa/12090/2025|IA|2025-01-30
atgttggggaaatgcttgaccgcgggctactgctcgcaattgctttttttctggtgtatcgtgccgttctgttttgctgcgctcgtcaacgccgccagcaacagcagctcccatttacagttgatttataacctgacgatatgcgagctgaatggcacagattggttgaatcaaaagtttgattgggcagtggagacttttgtcatttttcctgtgttgacccacattgtctcctacggtgcccttaccaccagccatttccttgacacggccggcctaatcactgtgtctaccgccggatattaccatgggcggtatgtgttgagtagcatctacgccgtctttgccctggctgcgttgatttgttttgtcattaggttgacaaaaaactgtatgtcctggcgctactcatgtaccagatataccaactttcttctggacaccaaaggcaatctctatcgttggcggtcacccgtcgttatagagagaaggggtaaagttgaggttggagaccacctaatcgacctcaaaagagttgtgcttgatggttccgcggcaacccctataaccaagatttcagcggaacaatggggtcgtccctag